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Papers

This is a collection of research papers.

High-throughput DNA engineering by mating bacteria

3 September 2024

bioRxiv

An improved algorithm for inferring mutational parameters from Bar-seq evolution experiments

6 May 2023

BMC Genomics

Fit-Seq-2.0: an improved software for high throughput fitness measurements using pooled competition assays

6 March 2023

Journal of Molecular Evolution

Neural networks enable efficient and accurate simulation-based inference of evolutionary parameters from adaptation dynamics

27 May 2022

PLoS Biology

A large accessory protein interactome is rewired across environments

14 September 2020

eLife

iSeq 2.0: a modular and interchangeable toolkit for interaction screening in yeasts

24 April 2019

Cell Systems

Unbiased fitness estimation of pooled barcode or amplicon sequencing studies

28 November 2018

Cell Systems

Gene architectures that minimize cost of gene expression

5 January 2017

Molecular Cell

Convergence of infinite products of stochastic matrices: a graphical decomposition criterion

1 November 2016

IEEE Transactions on Automatic Control

Convergence analysis of discrete-time consensus algorithm with both self and transmission delays

7 June 2016

Journal of the Franklin Institute

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